PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 73157
Common NameSELMODRAFT_73150, SELMODRAFT_73157
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ERF
Protein Properties Length: 57aa    MW: 6694.81 Da    PI: 11.1944
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
73157genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-20150356
    AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
           ykGVr+++ +g+Wv+eIr+p++   r r++lg+f t+e+Aaka++ a  +l+g+
  73157  1 YKGVRRRS-WGKWVSEIREPRK---RSRIWLGSFATPEMAAKAYDYAVFCLRGP 50
           9****887.**********954...5*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.14E-27157No hitNo description
SuperFamilySSF541713.53E-22157IPR016177DNA-binding domain
SMARTSM003801.8E-30157IPR001471AP2/ERF domain
PfamPF008479.3E-14149IPR001471AP2/ERF domain
PROSITE profilePS5103223.314157IPR001471AP2/ERF domain
PRINTSPR003676.3E-10112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-31157IPR001471AP2/ERF domain
PRINTSPR003676.3E-102339IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 57 aa     Download sequence    Send to blast
YKGVRRRSWG KWVSEIREPR KRSRIWLGSF ATPEMAAKAY DYAVFCLRGP SAMLNFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-17157360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-18157663ATERF1
3gcc_A9e-18157663ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00020PBMTransfer from AT4G36900Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002969964.11e-35hypothetical protein SELMODRAFT_73157, partial
RefseqXP_002981434.11e-35hypothetical protein SELMODRAFT_73150, partial
SwissprotO221741e-28ERF08_ARATH; Ethylene-responsive transcription factor ERF008
SwissprotQ9SW633e-28RA210_ARATH; Ethylene-responsive transcription factor RAP2-10
TrEMBLD8RFB81e-35D8RFB8_SELML; Putative uncharacterized protein (Fragment)
STRINGEFJ290884e-35(Selaginella moellendorffii)
STRINGEFJ176224e-35(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.18e-30DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]